General: Normalize several headers' include paths

Normalizes the include paths and makes them consistent. Also adds any
missing includes relevant to the interface.

Runtime/CDvdFile.hpp

@@ -1,13 +1,18 @@
 #pragma once
 
-#include "RetroTypes.hpp"
-#include "athena/FileReader.hpp"
-
-#include <thread>
-#include <mutex>
+#include <atomic>
 #include <condition_variable>
+#include <memory>
+#include <mutex>
+#include <string>
+#include <thread>
 #include <unordered_map>
 
+#include "Runtime/GCNTypes.hpp"
+#include "Runtime/RetroTypes.hpp"
+
+#include <athena/FileReader.hpp>
+
 namespace urde {
 
 enum class ESeekOrigin { Begin = 0, Cur = 1, End = 2 };